Changelog
=========

1.1.0 (2025-07-08)
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* Added analysis of protein-ligand interactions:
  - Contact maps
  - Hydrophobic contacts
  - Salt bridges
* Added new system-level analyses:
  - System density
  - Temperature
  - Pressure
* Added advanced structure-based analyses:
  - Ligand dihedral angles
  - Protein side chain rotamers (Chi1 vs Chi2)
  - Phi and Psi backbone angles
* Added distance matrix analysis.

1.0.6 (2025-05-01)
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* Initial release with core trajectory analysis features:
  - RMSD (Root Mean Square Deviation)
  - RMSF (Root Mean Square Fluctuation)
  - Radius of Gyration (Rg)
  - Hydrogen bonds (Hbond)
  - Secondary structure analysis
  - Ligand density (3D and projected)