Contents
- Overview
- Installation
- Running Automated Tests for DynamiSpectra
- Input
- Root Mean Square Deviation
- Root Mean Square Fluctuation
- Radius of Gyration
- Hydrogen Bond Analysis
- Solvent Accessible Surface Area
- Salt Bridge
- Protein–Ligand Contacts
- Protein–Ligand Minimum Distance
- Protein-Ligand Hydrophobic Contacts
- Inter-residue Distance Matrix
- Phi and Psi Angles
- Rotamers (Dihedral χ1 and χ2 Angles)
- Ligand Density
- Ligand Dihedral Angle Analysis
- Principal Component Analysis (PCA)
- Secondary Structure Probability
- Secondary Structure Fractions
- Pressure Analysis
- Temperature Analysis
- Density Analysis
- RMSD
- RMSF
- Radius of gyration
- Hydrogen Bond Analysis
- Solvent Accessible Surface Area
- Salt Bridge
- Protein-Ligand Contacts
- Protein-Ligand Minimal Distance
- Protein–Ligand Hydrophobic Contacts
- Inter-residue Distance Matrix
- Phi and Psi Angles
- Rotamers
- Ligand Density
- Ligand Angle
- Principal Component Analysis
- Secondary Structure Probability
- Secondary Structure Fraction
- System Pressure
- System Temperature
- System Density
- Contributing
- Authors
- Changelog